PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G009800.1
Common NameB456_008G009800, LOC105762661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 498aa    MW: 54187.6 Da    PI: 8.1853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G009800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0580102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.008G009800.1  80 FVCEICKKGFQRDQNLQLHRRGH 102
                         89*******************88 PP

2zf-C2H215.64.5e-05156178123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H++t+
  Gorai.008G009800.1 156 WKCDKCSKKYAVQSDWKAHQKTC 178
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.9E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-779102No hitNo description
SMARTSM003550.03980102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63780102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355110121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-7151177No hitNo description
SMARTSM0035594156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSNISGDDDD GSFSSGDKQQ QLQINKFPVS GASNTNGSSS SSSQQPLQGA KRKRNLPGTP  60
DPNAEVIALS PTTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ RATTEVKKRV  120
YVCPEPSCVH HNAARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT  180
KEYKCDCGTI FARRDSFITH RAFCDALAEE NNKVNNNHGA LMNNMGSPNS QNQIAELMSS  240
SMSMSGNVLP DFKSLPQELV PMQFKSMNMG GGGGIFSSSS GTLFGGPRTI SSASSSLQLS  300
TNTSSGFSYL QDNINGCCQV SGSPHMSATA LLQKAAQMGS AGSNSINSTM MQKSFETPYD  360
QFPVSQADQS NMVGISHGSP NEMTQLFNAA TEAMNHMGMF TTTTNMFINQ GGLMMNNHME  420
HEDSASPTVP SIFGVSNGGS NMTTLDFMGI NNEGSRTTAA NLHEEQFEQQ RMSMMNPFQQ  480
QQLSHGDSAI EKPIWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_B2e-11372005180Aart
2i13_A2e-11372005180Aart
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431080.0AC243108.1 Gossypium raimondii clone GR__Ba0022M02-hvj, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435929.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-115IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0D2PLV40.0A0A0D2PLV4_G
STRINGPOPTR_0002s20950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.14e-98C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]